PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_032299C05.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 383aa    MW: 43514.6 Da    PI: 7.6133
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_032299C05.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.4e-073554626
                           -SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH  6 CrffartGtCkyGdrCkFaHg 26
                           C  f+++G C+yG+rC++ H+
  Traes_6DL_032299C05.2 35 CT-FYQNGVCSYGSRCRYEHV 54
                           66.6666***********997 PP

2zf-CCCH23.78.1e-08139160426
                            ---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                            ++C+ fa+ GtC+yG  C+ +Hg
  Traes_6DL_032299C05.2 139 PICS-FAAAGTCPYGKECPQMHG 160
                            5788.*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.901128IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-5227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-7426IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4529IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0332956IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-43055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-53153IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-53453IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-53554IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.136135162IPR000571Zinc finger, CCCH-type
SMARTSM003560.017136161IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-5140160IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.86E-14189268No hitNo description
Gene3DG3DSA:3.30.40.103.2E-11197263IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00305203264No hitNo description
PROSITE profilePS5008912.371204262IPR001841Zinc finger, RING-type
SMARTSM001841.1E-6204261IPR001841Zinc finger, RING-type
PfamPF000971.8E-7204261IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180228237IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS501038.606291316IPR000571Zinc finger, CCCH-type
SMARTSM0035615291319IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MSNRSICKFF VNGACFKGDY CQFSHDWNDQ PNDVCTFYQN GVCSYGSRCR YEHVEVSSEY  60
TPPSTTAALA PSNSYLSWCP LCEGEIDVSN QTHKSLSVCS VHQSTWRFDD EDCIPEDGNS  120
LSSALTAQNQ ALHPLAHLPI CSFAAAGTCP YGKECPQMHG DPCTSCGKQC LHPYRPSEGG  180
AHIKLCKRNN KRLETLKKSE EMECSVCLDR VLSKPTAAEK RFGLLPECDH AFCITCIRKW  240
RSSSLTSSMD IDSTVKACPI CRKVSYYVIP SATWYSSKEE KQDIIDGYKA KLKSIDCRYF  300
DFGRDTCPFG GRCFYKYCMF TSMPTPMGVW RSRQRWQCFI FMPTMVVWSM QEILDWRTCS  360
AGYICSIQKE AVEKRSTYLL REP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3720370.0AK372037.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2145F18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235892.11e-174PREDICTED: E3 ubiquitin-protein ligase makorin-like isoform X1
RefseqXP_010235893.11e-174PREDICTED: E3 ubiquitin-protein ligase makorin-like isoform X1
SwissprotQ5ZA071e-138C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLW5GTV80.0W5GTV8_WHEAT; Uncharacterized protein
STRINGMLOC_75448.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53263356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-107C3H family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]